Publications & Conferences
Comprehensive record of publications, oral talks, posters, and conference activities. Filter by category, search by topic, or browse by project tag.
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Research / Method
#DLPROBSEG
2026Learning Fragment-Based Segmentation of Binding Sites from Molecular Dynamics: A Proof of Concept on Cardiac Myosin
Yang, Y. Y., Pickersgill, R. W., and Fornili, A.
Journal of Chemical Information and Modeling (JCIM)
Preprint
2026Architecture of the type II secretion system
Tayebinia, M., Ghanem, N., Zhang, H., Yang, Y. Y., Fornili, A., Shevchik, V., Darbari, V., and Pickersgill, R.
bioRxiv (Preprint)
Research / Tool
#FASTEVALP
Feb 2024FastEval Parkinsonism: an instant deep learning–assisted video-based online system for Parkinsonian motor symptom evaluation
Yang, Y. Y., Ho, M. Y., Tai, C. H., Wu, R. M., Kuo, M. C., and Tseng, Y. J.
NPJ Digital Medicine
Research
#WPIFEMUSL
Jan 2024Encapsulation with a complex of acidic/alkaline polysaccharide-whey protein isolate fibril bilayer microcapsules enhances the stability of β-carotene under acidic environments
Yang, Y. Y., Lai, Y. R., How, S. C., Lin, T. H., and Wang, S. S. S.
Journal of the Taiwan Institute of Chemical Engineers
Master's Thesis
#FASTEVALP
Apr 2023FastEval Parkinsonism: an instant deep learning-based online self-evaluation system for the diagnosis of Parkinson's symptoms with hand videos using finger tapping
Yang, Y. Y.
NTU BEBI (Best Master Thesis Award 2023)
Research
#COVIDVARI
May 2023The evolution of SARS-CoV-2 Omicron Variants on the spike-protein and hACE2 interface – determined by the hydrogen bonding formations
Yang, Y. Y. and Tseng, Y. J.
Briefings in Functional Genomics
Review
#QUANTCADD
Mar 2023Recent advances in quantum computing for drug discovery and development
Wang, P. H., Chen J. H., Yang, Y. Y., Lee, C., and Tseng, Y. J.
IEEE Nanotechnology Magazine
Oral Presentation
#DLPROBSEG
Jun 2025Holo-like conformation selection using a computer vision-based deep-learning model
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
UKRI/BBSRC AI for Drug Discovery Summer Symposium 2025 • London, UK
Oral Presentation
#DLPROBSEG
Oct 2024Deep learning for binding site segmentation in protein ensembles
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
Evotec PhD Day 2024 • Virtual / Evotec
Oral Presentation
#COVIDVARI
Mar 2022Competitive analysis of different SARS-CoV-2 variants in United Kingdom, Israel, South Africa, Brazil and Peru
Yang, Y. Y. and Tseng, Y. J.
American Chemical Society (ACS) Spring 2022 • Virtual
Poster
#DLPROBSEG
Jun 2025Holo-like conformation selection using a computer vision-based deep-learning model
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
QMUL SBBS Postgraduate Research Symposium 2025 • London, UK
Poster
#DLPROBSEG
Jun 2025Holo-like conformation selection using a computer vision-based deep-learning model
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
Thomas Young Centre (TYC) Postgraduate Student Day 2025 • London, UK
Poster / Lightning Talk
#DLPROBSEG
Aug 2024Deep learning for binding site segmentation in protein ensembles
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
MDAnalysis UGM 2024 • London, UK
Poster
#DLPROBSEG
Jul 2024Deep learning for binding site segmentation in protein ensembles
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
CCP5 Summer School 2024 • Newcastle, UK
Poster
Jun 2024Graph Linkage and Database Cross-Reference in Assay Cascade Analysis for Acute Myeloid Leukemia (AML)
Yang, Y. Y., Ismail, N. M., Siu, P. C., Occhetta, M., Mellor, C., Dai, W., Finke, B., Bessant, C., Walker, A., and Crowther, D.
UKRI/BBSRC AI for Drug Discovery Summer Symposium 2024 • London, UK
Poster
#DLPROBSEG
Jun 2024Deep learning for binding site segmentation in protein ensembles
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
UKRI/BBSRC AI for Drug Discovery Summer Symposium 2024 • London, UK
Poster
#DLPROBSEG
May 2024Deep learning for binding site segmentation in protein ensembles
Yang, Y. Y., Pickersgill, R. W., Fornili, A.
Thomas Young Centre (TYC) Postgraduate Student Day 2024 • London, UK
Poster
#SASDBQSAR
Aug 2022QSAR model of carcinogenicity based on data from GreenScreen hazard assessment
Wang, P. H., Yang, Y. Y., and Tseng, Y. J.
American Chemical Society (ACS) Fall 2022 • Virtual
Poster
#SASDBQSAR
Aug 2022Current trends in safer alternatives and risk assessment
Wang, Y. K., Yang, Y. Y., Chang, C. Y., and Tseng, Y. J.
American Chemical Society (ACS) Fall 2022 • Virtual
Poster
#SASDBQSAR
Aug 2022Benchmark dataset for hazardous substances for safer alternative chemicals
Kuo, T. C., Wang, P. H., Wang, Y. K., Yang, Y. Y., Yao, P. Y., Jhong, Y. C., Chang, C. Y., Lee, C. Y., and Tseng, Y. J.
American Chemical Society (ACS) Fall 2022 • Virtual
Conference Organization
Organizer
2024Conference Organizing Committee
London Biomedical Taiwanese Society (LTBS) • London, UK
Organized the 18th Interdisciplinary Biomedical Sciences Conference (iBS18) in London, facilitating scientific exchange and community building for biomedical researchers.
Teaching & Mentorship
Demonstrator
2024Laboratory Demonstrator & STEM Teaching
Queen Mary University of London (QMUL) • London, UK
Demonstrated and guided undergraduate and foundation students in CHE209 (Python programming), BIO213 (planarian regeneration experiments), and SEF032 (β-galactosidase enzymology and DNA extraction).
Open Source Volunteering
Open Source Contributor
2025Open-Source Scientific Software Contributor
MDAnalysis & ProLIF (Google Summer of Code)
Contributed implicit hydrogen bond detection and ligand-receptor interaction profiling tools to the open-source biophysical simulation community.
Attendance
Jan 2025
Biologics by Design Europe 2025
Chemical Computing Group (CCG) • Virtual
Attendance
Nov 2024
28th MGMS Young Modellers’ Forum (YMF) 2024
Molecular Graphics and Modelling Society • Oxford, UK
Attendance
Oct 2024
ELRIG Conference - Drug Discovery 2024
ELRIG • London, UK
Attendance
Jul 2024
NSTC x LTBS Cross-Disciplinary Conference 2024
National Science and Technology Council & LTBS • London, UK
Attendance
Jun 2024
UCL Information Studies Research Open Day
University College London • London, UK
Attendance
Apr 2024
2024 UK-QSAR Spring Meeting
UK-QSAR • Babraham, UK
Attendance
Mar 2024
AI UK 2024
The Alan Turing Institute • London, UK
Attendance
Mar 2024
BMCS Conformational Design in Drug Discovery 2024
RSC Biological and Medicinal Chemistry Sector • Stevenage, UK
Attendance
Mar 2024
QMUL SBBS PGR Symposium 2024
Queen Mary University of London • London, UK
Attendance
Jan 2024
Festival of Genomics and Biodata 2024
Front Line Genomics • London, UK
Attendance
Jan 2024
AIDD Winter School 2024
AI for Drug Discovery Doctoral Training Programme • London, UK
Attendance
Nov 2023
27th MGMS Young Modellers’ Forum (YMF) 2023
Molecular Graphics and Modelling Society • Oxford, UK
Attendance
Nov 2023
17th Interdisciplinary Biomedical Sciences Conference (iBS17)
London Biomedical Taiwanese Society (LTBS) • London, UK
Attendance
Nov 2023
AI at a Turning Point: How Can We Create Equitable AI Governance Futures?
Symposium on AI Ethics & Governance • London, UK
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