Hi again, I am now in the middle of my GSoC journey. Now, we are going to have the main course: implicit hydrogen bond interactions.

In this blog post, you will know more about why calculating the implicit hydrogen bond interaction is important and how we design the algorithm of implicit hydrogen …

Well, two weeks ago, I developed my protein helper function. Before merging codes into the codespace, I will need to undergo a process “code review”.

During the code review period, the code style will need to be aligned to the main codespace, the file will be organized better, and the …

You may have known that I am a GSoC (Google Summer of Code) contributor in 2025, focusing on “MDAnalysis x ProLIF Project 5: H-Bond interactions from implicit hydrogens” (Intro for this project).

Before developing the main function of calculating implicit H-bond interaction, one …

Google Summer of Code is a global program that connects contributors with open source organizations for 12+ week coding projects guided by mentors.

This year (2025), I am glad to be a contributor in “MDAnalysis x ProLIF Project 5: H-Bond interactions from implicit hydrogens”. It is a …

This is a summary list for my publication and conference, which is updated manually. Click on the project codes (e.g. FASTEVALP) to have a brief understanding of the project.

Publication

2024

5. [ …

[The summary is generated by SciSpace.]
[The image is generated by Stable Diffusion XL 1.0.]

Summary of the Research Paper on SARS-CoV-2 Omicron Variants

• The study investigates the spike protein and hACE2 interface of SARS-CoV-2 omicron variants, focusing on hydrogen bond formation.
• It highlights …

Multiple protein conformations are used to accurately represent binding site structure and dynamics in ensemble docking or de novo drug design. Following conformational selection, these conformations are often generated through molecular dynamics (MD) simulations of the protein in the ligand-free …

[The summary is organized by GPT-4o.]

The project explores how quantum computing is revolutionizing drug discovery by accelerating timelines and reducing costs in a traditionally lengthy and expensive process. It highlights quantum applications in key stages of drug development.

Key Points

1. Drug …

The Motor Disorder Society’s Unified Parkinson’s Disease Rating Scale (MDS-UPDRS) is commonly used to assess bradykinesia, a hallmark symptom of Parkinson’s disease (PD). However, it falls short in capturing the full variability of bradykinesia throughout the day outside of a clinical setting. To …

Under development.

Know more from reference…

Yang, Y. Y., Lai, Y. R., How, S. C., Lin, T. H., and Wang, S. S. S. (Jan. 2024). “Encapsulation with a complex of acidic/alkaline polysaccharide-whey protein isolate fibril bilayer microcapsules enhances the stability of β-carotene under …